J3_4V6A_068

3D structure

PDB id

4V6A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of EF-P bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAUAG*CG*UCG

Length

11 nucleotides

Bulged bases

4V6A|1|DB|A|13, 4V6A|1|DB|U|14, 4V6A|1|DB|C|109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6A_068 not in the Motif Atlas

Homologous match to J3_9DFE_020

Geometric discrepancy: 0.1793

The information below is about J3_9DFE_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12003.2

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

4V6A|1|DB|C|11
4V6A|1|DB|C|12
4V6A|1|DB|A|13
4V6A|1|DB|U|14
4V6A|1|DB|A|15
4V6A|1|DB|G|16
*
4V6A|1|DB|C|68
4V6A|1|DB|G|69
*
4V6A|1|DB|U|108
4V6A|1|DB|C|109
4V6A|1|DB|G|110

Current chains

Chain DB

5S ribosomal RNA

Nearby chains

Chain D0

50S ribosomal protein L27

Chain DA

Large subunit ribosomal RNA; LSU rRNA