J3_9DFE_020

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CCAUAG*CG*UCG

Length

11 nucleotides

Bulged bases

9DFE|1|1B|U|14, 9DFE|1|1B|C|109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12003.2

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

9DFE|1|1B|C|11
9DFE|1|1B|C|12
9DFE|1|1B|A|13
9DFE|1|1B|U|14
9DFE|1|1B|A|15
9DFE|1|1B|G|16
*
9DFE|1|1B|C|68
9DFE|1|1B|G|69
*
9DFE|1|1B|U|108
9DFE|1|1B|C|109
9DFE|1|1B|G|110

Current chains

Chain 1B

5S Ribosomal RNA

Nearby chains

Chain 10

50S ribosomal protein L27

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 1S

50S ribosomal protein L18

Chain 1Z

50S ribosomal protein L25