J3_4V6C_058

3D structure

PDB id

4V6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.19 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

4V6C|1|BA|A|504, 4V6C|1|BA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6C_058 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.0505

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V6C|1|BA|G|30
4V6C|1|BA|C|31
*
4V6C|1|BA|G|474
4V6C|1|BA|C|475
4V6C|1|BA|G|476
4V6C|1|BA|A|477
4V6C|1|BA|A|478
4V6C|1|BA|A|479
4V6C|1|BA|A|480
4V6C|1|BA|G|481
4V6C|1|BA|A|482
4V6C|1|BA|A|483
4V6C|1|BA|C|484
*
4V6C|1|BA|G|496
4V6C|1|BA|A|497
4V6C|1|BA|G|498
4V6C|1|BA|U|499
4V6C|1|BA|G|500
4V6C|1|BA|A|501
4V6C|1|BA|A|502
4V6C|1|BA|A|503
4V6C|1|BA|A|504
4V6C|1|BA|A|505
4V6C|1|BA|G|506
4V6C|1|BA|A|507
4V6C|1|BA|A|508
4V6C|1|BA|C|509
4V6C|1|BA|C|510

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22

Chain BU

50S ribosomal protein L24