J3_4V6D_013

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

4V6D|1|AA|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6D_013 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1624

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V6D|1|AA|C|1237
4V6D|1|AA|A|1238
4V6D|1|AA|A|1239
4V6D|1|AA|U|1240
4V6D|1|AA|G|1241
*
4V6D|1|AA|C|1296
4V6D|1|AA|G|1297
4V6D|1|AA|U|1298
4V6D|1|AA|A|1299
4V6D|1|AA|G|1300
4V6D|1|AA|U|1301
4V6D|1|AA|C|1302
4V6D|1|AA|C|1303
*
4V6D|1|AA|G|1334
4V6D|1|AA|U|1335
4V6D|1|AA|C|1336
4V6D|1|AA|G|1337

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AM

30S ribosomal protein S13