3D structure

PDB id
4V6D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
Experimental method
X-RAY DIFFRACTION
Resolution
3.81 Å

Loop

Sequence
CGUCAG*CGCAACC*GAUGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V6D_036 not in the Motif Atlas
Homologous match to J3_4LFB_007
Geometric discrepancy: 0.0916
The information below is about J3_4LFB_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

4V6D|1|CA|C|1063
4V6D|1|CA|G|1064
4V6D|1|CA|U|1065
4V6D|1|CA|C|1066
4V6D|1|CA|A|1067
4V6D|1|CA|G|1068
*
4V6D|1|CA|C|1107
4V6D|1|CA|G|1108
4V6D|1|CA|C|1109
4V6D|1|CA|A|1110
4V6D|1|CA|A|1111
4V6D|1|CA|C|1112
4V6D|1|CA|C|1113
*
4V6D|1|CA|G|1187
4V6D|1|CA|A|1188
4V6D|1|CA|U|1189
4V6D|1|CA|G|1190
4V6D|1|CA|A|1191
4V6D|1|CA|C|1192
4V6D|1|CA|G|1193

Current chains

Chain CA
16S rRNA

Nearby chains

Chain CC
30S ribosomal protein S3
Chain CE
30S ribosomal protein S5
Chain CI
30S ribosomal protein S9
Chain CJ
30S ribosomal protein S10
Chain CN
30S ribosomal protein S14

Coloring options:


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