J3_4V6D_067

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

4V6D|1|DA|A|504, 4V6D|1|DA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6D_067 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.1181

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V6D|1|DA|G|30
4V6D|1|DA|C|31
*
4V6D|1|DA|G|474
4V6D|1|DA|C|475
4V6D|1|DA|G|476
4V6D|1|DA|A|477
4V6D|1|DA|A|478
4V6D|1|DA|A|479
4V6D|1|DA|A|480
4V6D|1|DA|G|481
4V6D|1|DA|A|482
4V6D|1|DA|A|483
4V6D|1|DA|C|484
*
4V6D|1|DA|G|496
4V6D|1|DA|A|497
4V6D|1|DA|G|498
4V6D|1|DA|U|499
4V6D|1|DA|G|500
4V6D|1|DA|A|501
4V6D|1|DA|A|502
4V6D|1|DA|A|503
4V6D|1|DA|A|504
4V6D|1|DA|A|505
4V6D|1|DA|G|506
4V6D|1|DA|A|507
4V6D|1|DA|A|508
4V6D|1|DA|C|509
4V6D|1|DA|C|510

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DQ

50S ribosomal protein L20

Chain DS

50S ribosomal protein L22

Chain DU

50S ribosomal protein L24