3D structure

PDB id
4V6E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
Experimental method
X-RAY DIFFRACTION
Resolution
3.71 Å

Loop

Sequence
UA*UACCGGUGG*CGG
Length
14 nucleotides
Bulged bases
4V6E|1|AA|U|723
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V6E_003 not in the Motif Atlas
Homologous match to J3_5J7L_003
Geometric discrepancy: 0.1028
The information below is about J3_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.4
Basepair signature
cWW-cWW-tWW-cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4V6E|1|AA|U|672
4V6E|1|AA|A|673
*
4V6E|1|AA|U|717
4V6E|1|AA|A|718
4V6E|1|AA|C|719
4V6E|1|AA|C|720
4V6E|1|AA|G|721
4V6E|1|AA|G|722
4V6E|1|AA|U|723
4V6E|1|AA|G|724
4V6E|1|AA|G|725
*
4V6E|1|AA|C|732
4V6E|1|AA|G|733
4V6E|1|AA|G|734

Current chains

Chain AA
16S rRNA

Nearby chains

Chain AF
30S ribosomal protein S6
Chain AK
30S ribosomal protein S11
Chain AO
30S ribosomal protein S15
Chain AR
30S ribosomal protein S18
Chain AU
30S ribosomal protein S21

Coloring options:


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