J3_4V6E_032

3D structure

PDB id

4V6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6E_032 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1023

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

4V6E|1|CA|C|936
4V6E|1|CA|A|937
4V6E|1|CA|A|938
4V6E|1|CA|G|939
*
4V6E|1|CA|C|1344
4V6E|1|CA|U|1345
4V6E|1|CA|A|1346
4V6E|1|CA|G|1347
4V6E|1|CA|U|1348
4V6E|1|CA|A|1349
4V6E|1|CA|A|1350
*
4V6E|1|CA|U|1372
4V6E|1|CA|G|1373
4V6E|1|CA|A|1374
4V6E|1|CA|A|1375
4V6E|1|CA|U|1376
4V6E|1|CA|A|1377
4V6E|1|CA|C|1378
4V6E|1|CA|G|1379

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CG

30S ribosomal protein S7

Chain CI

30S ribosomal protein S9