3D structure

PDB id
4V6F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongation complex of the 70S ribosome with three tRNAs and mRNA.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UG*UGUUG*CGCAA
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V6F_039 not in the Motif Atlas
Homologous match to J3_5J7L_009
Geometric discrepancy: 0.1209
The information below is about J3_5J7L_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76043.3
Basepair signature
cWW-cWW-tSS-F-F-F-F-cWW
Number of instances in this motif group
3

Unit IDs

4V6F|1|CA|U|1073
4V6F|1|CA|G|1074
*
4V6F|1|CA|U|1083
4V6F|1|CA|G|1084
4V6F|1|CA|U|1085
4V6F|1|CA|U|1086
4V6F|1|CA|G|1087
*
4V6F|1|CA|C|1098
4V6F|1|CA|G|1099
4V6F|1|CA|C|1100
4V6F|1|CA|A|1101
4V6F|1|CA|A|1102

Current chains

Chain CA
16S ribosomal RNA

Nearby chains

Chain C1
MRNA
Chain CE
30S ribosomal protein S2
Chain CH
30S ribosomal protein S5

Coloring options:


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