J3_4V6F_053

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAC*GGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6F_053 not in the Motif Atlas

Homologous match to J3_7RQB_013

Geometric discrepancy: 0.1089

The information below is about J3_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24416.1

Basepair signature

cWW-F-F-tWH-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V6F|1|DA|C|2789
4V6F|1|DA|A|2790
4V6F|1|DA|C|2791
*
4V6F|1|DA|G|2805
4V6F|1|DA|G|2807
4V6F|1|DA|U|2808
4V6F|1|DA|A|2809
4V6F|1|DA|A|2810
4V6F|1|DA|G|2811
*
4V6F|1|DA|C|2889
4V6F|1|DA|G|2891
4V6F|1|DA|A|2892
4V6F|1|DA|G|2893
4V6F|1|DA|G|2894

Current chains

Chain DA

23S RRNA

Nearby chains

Chain DE

50S RIBOSOMAL PROTEIN L3