J3_4V6F_068

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4V6F|1|DA|U|504, 4V6F|1|DA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6F_068 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0902

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4V6F|1|DA|G|30
4V6F|1|DA|C|31
*
4V6F|1|DA|G|474
4V6F|1|DA|U|475
4V6F|1|DA|G|476
4V6F|1|DA|A|477
4V6F|1|DA|A|478
4V6F|1|DA|A|479
4V6F|1|DA|A|480
4V6F|1|DA|G|481
4V6F|1|DA|A|482
4V6F|1|DA|A|483
4V6F|1|DA|C|484
*
4V6F|1|DA|G|496
4V6F|1|DA|A|497
4V6F|1|DA|G|498
4V6F|1|DA|U|499
4V6F|1|DA|G|500
4V6F|1|DA|A|501
4V6F|1|DA|A|502
4V6F|1|DA|A|503
4V6F|1|DA|U|504
4V6F|1|DA|A|505
4V6F|1|DA|G|506
4V6F|1|DA|A|507
4V6F|1|DA|G|508
4V6F|1|DA|C|509
4V6F|1|DA|C|510

Current chains

Chain DA

23S RRNA

Nearby chains

Chain D1

50S RIBOSOMAL PROTEIN L20

Chain DS

50S RIBOSOMAL PROTEIN L22

Chain DU

50S RIBOSOMAL PROTEIN L24