J3_4V6F_071

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

4V6F|1|DA|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6F_071 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0651

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4V6F|1|DA|C|297
4V6F|1|DA|G|298
4V6F|1|DA|A|299
4V6F|1|DA|A|300
4V6F|1|DA|G|301
*
4V6F|1|DA|C|316
4V6F|1|DA|G|317
4V6F|1|DA|C|318
4V6F|1|DA|C|319
4V6F|1|DA|A|320
4V6F|1|DA|G|321
4V6F|1|DA|A|322
4V6F|1|DA|G|323
4V6F|1|DA|A|324
4V6F|1|DA|G|325
*
4V6F|1|DA|C|337
4V6F|1|DA|G|338
4V6F|1|DA|U|339
4V6F|1|DA|A|340
4V6F|1|DA|G|341

Current chains

Chain DA

23S RRNA

Nearby chains

Chain DF

50S RIBOSOMAL PROTEIN L4

Chain DU

50S RIBOSOMAL PROTEIN L24