J3_4V6G_050

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

4V6G|1|DA|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6G_050 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.113

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

4V6G|1|DA|G|1344
4V6G|1|DA|C|1345
4V6G|1|DA|G|1346
4V6G|1|DA|G|1347
4V6G|1|DA|G|1348
4V6G|1|DA|A|1349
4V6G|1|DA|C|1350
*
4V6G|1|DA|G|1381
4V6G|1|DA|G|1382
4V6G|1|DA|C|1383
4V6G|1|DA|A|1384
4V6G|1|DA|G|1385
*
4V6G|1|DA|C|1402
4V6G|1|DA|C|1403

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D7

50S ribosomal protein L34