J3_4V6G_065

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

4V6G|1|CA|A|50, 4V6G|1|CA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6G_065 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0948

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V6G|1|CA|G|46
4V6G|1|CA|C|47
4V6G|1|CA|C|48
4V6G|1|CA|U|49
4V6G|1|CA|A|50
4V6G|1|CA|A|51
4V6G|1|CA|G|52
*
4V6G|1|CA|U|359
4V6G|1|CA|A|360
4V6G|1|CA|G|361
4V6G|1|CA|G|362
4V6G|1|CA|A|363
4V6G|1|CA|A|364
4V6G|1|CA|U|365
4V6G|1|CA|C|366
4V6G|1|CA|U|367
*
4V6G|1|CA|A|393
4V6G|1|CA|G|394
4V6G|1|CA|C|395

Current chains

Chain CA

16S RRNA (E.COLI NUMBERING)

Nearby chains

Chain BK

50S ribosomal protein L9

Chain CO

30S RIBOSOMAL PROTEIN S12

Chain CS

30S RIBOSOMAL PROTEIN S16