J3_4V6G_067

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4V6G|1|DA|U|504, 4V6G|1|DA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6G_067 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1459

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4V6G|1|DA|G|30
4V6G|1|DA|C|31
*
4V6G|1|DA|G|474
4V6G|1|DA|U|475
4V6G|1|DA|G|476
4V6G|1|DA|A|477
4V6G|1|DA|A|478
4V6G|1|DA|A|479
4V6G|1|DA|A|480
4V6G|1|DA|G|481
4V6G|1|DA|A|482
4V6G|1|DA|A|483
4V6G|1|DA|C|484
*
4V6G|1|DA|G|496
4V6G|1|DA|A|497
4V6G|1|DA|G|498
4V6G|1|DA|U|499
4V6G|1|DA|G|500
4V6G|1|DA|A|501
4V6G|1|DA|A|502
4V6G|1|DA|A|503
4V6G|1|DA|U|504
4V6G|1|DA|A|505
4V6G|1|DA|G|506
4V6G|1|DA|A|507
4V6G|1|DA|G|508
4V6G|1|DA|C|509
4V6G|1|DA|C|510

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L20

Chain DS

50S ribosomal protein L22

Chain DU

50S ribosomal protein L24