J3_4V6I_003

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

ACUAG*CUUAG*CAAAGU

Length

16 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|CA|A|1036
4V6I|1|CA|C|1037
4V6I|1|CA|U|1038
4V6I|1|CA|A|1039
4V6I|1|CA|G|1040
*
4V6I|1|CA|C|1078
4V6I|1|CA|U|1079
4V6I|1|CA|U|1080
4V6I|1|CA|A|1081
4V6I|1|CA|G|1083
*
4V6I|1|CA|C|1090
4V6I|1|CA|A|1091
4V6I|1|CA|A|1092
4V6I|1|CA|A|1093
4V6I|1|CA|G|1094
4V6I|1|CA|U|1095

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AA

40S ribosomal protein rpS0 (S2p)

Chain AE

40S ribosomal protein rpS2 (S5p)

Chain AH

40S ribosomal protein rpS22 (S8p)