J3_4V6I_006
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCG
- Length
- 24 nucleotides
- Bulged bases
- 4V6I|1|CA|G|1200, 4V6I|1|CA|A|1203
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V6I|1|CA|C|1180
4V6I|1|CA|U|1181
4V6I|1|CA|U|1182
4V6I|1|CA|A|1183
4V6I|1|CA|A|1184
4V6I|1|CA|U|1185
4V6I|1|CA|U|1186
4V6I|1|CA|U|1187
*
4V6I|1|CA|G|1198
4V6I|1|CA|G|1199
4V6I|1|CA|G|1200
4V6I|1|CA|G|1201
4V6I|1|CA|A|1202
4V6I|1|CA|A|1203
4V6I|1|CA|A|1204
4V6I|1|CA|C|1205
4V6I|1|CA|U|1206
4V6I|1|CA|C|1207
4V6I|1|CA|A|1208
4V6I|1|CA|C|1209
*
4V6I|1|CA|G|1454
4V6I|1|CA|G|1455
4V6I|1|CA|C|1456
4V6I|1|CA|G|1458
Current chains
- Chain CA
- 18S rRNA
Nearby chains
- Chain AC
- 40S ribosomal protein rpS9 (S4p)
- Chain AI
- 40S ribosomal protein rpS16 (S9p)
- Chain AJ
- 40S ribosomal protein rpS20 (S10p)
- Chain AM
- 40S ribosomal protein rpS18 (S13p)
- Chain AN
- 40S ribosomal protein rpS29 (S14p)
- Chain AQ
- 40S ribosomal protein rpS17 (S17e)
- Chain AR
- 40S ribosomal protein rpS15 (S19p)
- Chain AZ
- 40S ribosomal protein rpS30 (S30e)
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