J3_4V6I_009

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

AC*GGACUAU*AUGGAAGUU

Length

18 nucleotides

Bulged bases

4V6I|1|CA|G|1387, 4V6I|1|CA|A|1391, 4V6I|1|CA|U|1413

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|CA|A|1337
4V6I|1|CA|C|1338
*
4V6I|1|CA|G|1386
4V6I|1|CA|G|1387
4V6I|1|CA|A|1388
4V6I|1|CA|C|1389
4V6I|1|CA|U|1390
4V6I|1|CA|A|1391
4V6I|1|CA|U|1392
*
4V6I|1|CA|A|1406
4V6I|1|CA|U|1407
4V6I|1|CA|G|1408
4V6I|1|CA|G|1409
4V6I|1|CA|A|1410
4V6I|1|CA|A|1411
4V6I|1|CA|G|1412
4V6I|1|CA|U|1413
4V6I|1|CA|U|1415

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AA

40S ribosomal protein rpS0 (S2p)

Chain AF

40S ribosomal protein rpS5 (S7p)

Chain AI

40S ribosomal protein rpS16 (S9p)

Chain Aa

40S ribosomal protein RACK1 (RACK1)