J3_4V6I_011

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UAUG*CGUCAUAGAG*CGUG

Length

18 nucleotides

Bulged bases

4V6I|1|DA|U|210

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|DA|U|186
4V6I|1|DA|A|187
4V6I|1|DA|U|188
4V6I|1|DA|G|189
*
4V6I|1|DA|C|205
4V6I|1|DA|G|206
4V6I|1|DA|U|207
4V6I|1|DA|C|208
4V6I|1|DA|A|209
4V6I|1|DA|U|210
4V6I|1|DA|A|211
4V6I|1|DA|G|212
4V6I|1|DA|A|213
4V6I|1|DA|G|214
*
4V6I|1|DA|C|226
4V6I|1|DA|G|227
4V6I|1|DA|U|228
4V6I|1|DA|G|229

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BD

60S ribosomal protein rpL4 (L4p)

Chain BY

60S ribosomal protein rpL26 (L24p)