J3_4V6I_017
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- UGAAGUG*CAAG*CUCUA
- Length
- 16 nucleotides
- Bulged bases
- 4V6I|1|DA|G|1483, 4V6I|1|DA|U|1484, 4V6I|1|DA|A|1859, 4V6I|1|DA|C|1872
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6I_017 not in the Motif Atlas
- Geometric match to J3_4V9F_005
- Geometric discrepancy: 0.3957
- The information below is about J3_4V9F_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32852.6
- Basepair signature
- cWW-tSH-F-F-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
4V6I|1|DA|U|1479
4V6I|1|DA|G|1480
4V6I|1|DA|A|1481
4V6I|1|DA|A|1482
4V6I|1|DA|G|1483
4V6I|1|DA|U|1484
4V6I|1|DA|G|1485
*
4V6I|1|DA|C|1857
4V6I|1|DA|A|1858
4V6I|1|DA|A|1859
4V6I|1|DA|G|1860
*
4V6I|1|DA|C|1870
4V6I|1|DA|U|1871
4V6I|1|DA|C|1872
4V6I|1|DA|U|1873
4V6I|1|DA|A|1874
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BT
- 60S ribosomal protein rpL19 (L19e)
- Chain Bp
- 60S ribosomal protein rpL40 (L40e)
Coloring options: