J3_4V6I_018

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GAAA*UGAUAAC*GUC

Length

14 nucleotides

Bulged bases

4V6I|1|DA|U|1840, 4V6I|1|DA|A|1841

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|DA|G|1488
4V6I|1|DA|A|1489
4V6I|1|DA|A|1490
4V6I|1|DA|A|1491
*
4V6I|1|DA|U|1837
4V6I|1|DA|G|1838
4V6I|1|DA|A|1839
4V6I|1|DA|U|1840
4V6I|1|DA|A|1841
4V6I|1|DA|A|1842
4V6I|1|DA|C|1843
*
4V6I|1|DA|G|1852
4V6I|1|DA|U|1853
4V6I|1|DA|C|1854

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BT

60S ribosomal protein rpL19 (L19e)

Chain Bl

60S ribosomal protein rpL37 (L37e)

Chain Bo

60S ribosomal protein rpL39 (L39e)

Chain Bp

60S ribosomal protein rpL40 (L40e)