J3_4V6I_020
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- AGAUGG*CGG*CACCAU*GCACCA*U
- Length
- 22 nucleotides
- Bulged bases
- 4V6I|1|DA|A|1580, 4V6I|1|DA|C|1581, 4V6I|1|DA|A|1580, 4V6I|1|DA|C|1581
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V6I|1|DA|A|1537
4V6I|1|DA|G|1538
4V6I|1|DA|A|1539
4V6I|1|DA|U|1540
4V6I|1|DA|G|1541
4V6I|1|DA|G|1542
*
4V6I|1|DA|C|1551
4V6I|1|DA|G|1552
4V6I|1|DA|G|1560
*
4V6I|1|DA|C|1579
4V6I|1|DA|A|1580
4V6I|1|DA|C|1581
4V6I|1|DA|C|1582
4V6I|1|DA|A|1583
4V6I|1|DA|U|1584
*
4V6I|1|DA|G|1560
4V6I|1|DA|C|1579
4V6I|1|DA|A|1580
4V6I|1|DA|C|1581
4V6I|1|DA|C|1582
4V6I|1|DA|A|1583
*
4V6I|1|DA|U|1584
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BB
- 60S ribosomal protein rpL2 (L2p)
- Chain BH
- 60S ribosomal protein rpL8 (L7ae)
- Chain BP
- 60S ribosomal protein rpL15 (L15e)
- Chain BX
- 60S ribosomal protein rpL25 (L23p)
- Chain Bl
- 60S ribosomal protein rpL37 (L37e)
- Chain DB
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: