J3_4V6I_023

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

AGCU*AAAG*UGAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|DA|A|2529
4V6I|1|DA|G|2530
4V6I|1|DA|C|2531
4V6I|1|DA|U|2532
*
4V6I|1|DA|A|2547
4V6I|1|DA|A|2561
4V6I|1|DA|A|2562
4V6I|1|DA|G|2563
*
4V6I|1|DA|U|2578
4V6I|1|DA|G|2579
4V6I|1|DA|A|2580
4V6I|1|DA|U|2581

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BB

60S ribosomal protein rpL2 (L2p)

Chain BH

60S ribosomal protein rpL8 (L7ae)

Chain BX

60S ribosomal protein rpL25 (L23p)

Chain Bi

60S ribosomal protein rpL34 (L34e)

Chain Bx

Unknown protein