J3_4V6I_027

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

AU*AGAUGUA*UCU

Length

12 nucleotides

Bulged bases

4V6I|1|DA|U|3317, 4V6I|1|DA|U|3319, 4V6I|1|DA|C|3388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|DA|A|3299
4V6I|1|DA|U|3300
*
4V6I|1|DA|A|3314
4V6I|1|DA|G|3315
4V6I|1|DA|A|3316
4V6I|1|DA|U|3317
4V6I|1|DA|G|3318
4V6I|1|DA|U|3319
4V6I|1|DA|A|3320
*
4V6I|1|DA|U|3387
4V6I|1|DA|C|3388
4V6I|1|DA|U|3389

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BC

60S ribosomal protein rpL3 (L3p)

Chain BV

60S ribosomal protein rpL17 (L22p)

Chain Bg

60S ribosomal protein rpL31 (L31e)