J3_4V6I_028

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CCAUAU*AGC*GUG

Length

12 nucleotides

Bulged bases

4V6I|1|DC|U|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|DC|C|9
4V6I|1|DC|C|10
4V6I|1|DC|A|11
4V6I|1|DC|U|12
4V6I|1|DC|A|13
4V6I|1|DC|U|14
*
4V6I|1|DC|A|64
4V6I|1|DC|G|65
4V6I|1|DC|C|66
*
4V6I|1|DC|G|107
4V6I|1|DC|U|108
4V6I|1|DC|G|109

Current chains

Chain DC

5S rRNA

Nearby chains

Chain BQ

60S ribosomal protein rpL5 (L18p)

Chain BU

60S ribosomal protein rpL21 (L21e)

Chain DA

Large subunit ribosomal RNA; LSU rRNA