J3_4V6I_033

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

AGACAU*GGG*CAUAAU

Length

15 nucleotides

Bulged bases

4V6I|1|DA|G|437, 4V6I|1|DA|A|438, 4V6I|1|DA|C|439, 4V6I|1|DA|A|619, 4V6I|1|DA|U|620, 4V6I|1|DA|A|621, 4V6I|1|DA|A|622

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|DA|A|436
4V6I|1|DA|G|437
4V6I|1|DA|A|438
4V6I|1|DA|C|439
4V6I|1|DA|A|440
4V6I|1|DA|U|441
*
4V6I|1|DA|G|493
4V6I|1|DA|G|494
4V6I|1|DA|G|495
*
4V6I|1|DA|C|618
4V6I|1|DA|A|619
4V6I|1|DA|U|620
4V6I|1|DA|A|621
4V6I|1|DA|A|622
4V6I|1|DA|U|623

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BG

60S ribosomal protein rpL6 (L6e)

Chain BV

60S ribosomal protein rpL17 (L22p)

Chain Bh

60S ribosomal protein pL32 (L32e)

Chain Bj

60S ribosomal protein rpL33 (L35ae)