J3_4V6I_034

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

AUC*GAGGAC*GGAU

Length

13 nucleotides

Bulged bases

4V6I|1|DA|A|589, 4V6I|1|DA|G|590, 4V6I|1|DA|G|591, 4V6I|1|DA|A|592, 4V6I|1|DA|G|610, 4V6I|1|DA|A|611

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|DA|A|501
4V6I|1|DA|U|502
4V6I|1|DA|C|503
*
4V6I|1|DA|G|588
4V6I|1|DA|A|589
4V6I|1|DA|G|590
4V6I|1|DA|G|591
4V6I|1|DA|A|592
4V6I|1|DA|C|593
*
4V6I|1|DA|G|609
4V6I|1|DA|G|610
4V6I|1|DA|A|611
4V6I|1|DA|U|612

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BD

60S ribosomal protein rpL4 (L4p)

Chain BG

60S ribosomal protein rpL6 (L6e)

Chain Be

60S ribosomal protein rpL7 (L30p)

Chain Bh

60S ribosomal protein pL32 (L32e)

Chain Bj

60S ribosomal protein rpL33 (L35ae)