J3_4V6I_037

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GGG*UAG*CGUCGC

Length

12 nucleotides

Bulged bases

4V6I|1|DA|G|1962, 4V6I|1|DA|A|2060, 4V6I|1|DA|G|2076, 4V6I|1|DA|U|2077, 4V6I|1|DA|C|2078, 4V6I|1|DA|G|2079

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|DA|G|1961
4V6I|1|DA|G|1962
4V6I|1|DA|G|1963
*
4V6I|1|DA|U|2059
4V6I|1|DA|A|2060
4V6I|1|DA|G|2061
*
4V6I|1|DA|C|2075
4V6I|1|DA|G|2076
4V6I|1|DA|U|2077
4V6I|1|DA|C|2078
4V6I|1|DA|G|2079
4V6I|1|DA|C|2080

Current chains

Chain DA

25S rRNA

Nearby chains