J3_4V6I_040
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- ACCACCAG*CUAGUAA*UGAUUACGUCCCU
- Length
- 28 nucleotides
- Bulged bases
- 4V6I|1|CA|C|1159, 4V6I|1|CA|A|1583, 4V6I|1|CA|C|1618, 4V6I|1|CA|C|1619
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V6I|1|CA|A|1157
4V6I|1|CA|C|1158
4V6I|1|CA|C|1159
4V6I|1|CA|A|1160
4V6I|1|CA|C|1161
4V6I|1|CA|C|1162
4V6I|1|CA|A|1163
4V6I|1|CA|G|1164
*
4V6I|1|CA|C|1581
4V6I|1|CA|U|1582
4V6I|1|CA|A|1583
4V6I|1|CA|G|1584
4V6I|1|CA|U|1585
4V6I|1|CA|A|1586
4V6I|1|CA|A|1587
*
4V6I|1|CA|U|1609
4V6I|1|CA|G|1610
4V6I|1|CA|A|1611
4V6I|1|CA|U|1612
4V6I|1|CA|U|1613
4V6I|1|CA|A|1614
4V6I|1|CA|C|1615
4V6I|1|CA|G|1616
4V6I|1|CA|U|1617
4V6I|1|CA|C|1618
4V6I|1|CA|C|1619
4V6I|1|CA|C|1620
4V6I|1|CA|U|1621
Current chains
- Chain CA
- 18S rRNA
Nearby chains
- Chain AF
- 40S ribosomal protein rpS5 (S7p)
- Chain AI
- 40S ribosomal protein rpS16 (S9p)
- Chain AJ
- 40S ribosomal protein rpS20 (S10p)
- Chain AY
- 40S ribosomal protein rpS28 (S28e)
- Chain CB
- Transfer RNA; tRNA
- Chain CC
- MRNA, RNA (5'-R(P*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3')
Coloring options: