3D structure

PDB id
4V6I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
8.8 Å

Loop

Sequence
ACCACCAG*CUAGUAA*UGAUUACGUCCCU
Length
28 nucleotides
Bulged bases
4V6I|1|CA|C|1159, 4V6I|1|CA|A|1583, 4V6I|1|CA|C|1618, 4V6I|1|CA|C|1619
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V6I|1|CA|A|1157
4V6I|1|CA|C|1158
4V6I|1|CA|C|1159
4V6I|1|CA|A|1160
4V6I|1|CA|C|1161
4V6I|1|CA|C|1162
4V6I|1|CA|A|1163
4V6I|1|CA|G|1164
*
4V6I|1|CA|C|1581
4V6I|1|CA|U|1582
4V6I|1|CA|A|1583
4V6I|1|CA|G|1584
4V6I|1|CA|U|1585
4V6I|1|CA|A|1586
4V6I|1|CA|A|1587
*
4V6I|1|CA|U|1609
4V6I|1|CA|G|1610
4V6I|1|CA|A|1611
4V6I|1|CA|U|1612
4V6I|1|CA|U|1613
4V6I|1|CA|A|1614
4V6I|1|CA|C|1615
4V6I|1|CA|G|1616
4V6I|1|CA|U|1617
4V6I|1|CA|C|1618
4V6I|1|CA|C|1619
4V6I|1|CA|C|1620
4V6I|1|CA|U|1621

Current chains

Chain CA
18S rRNA

Nearby chains

Chain AF
40S ribosomal protein rpS5 (S7p)
Chain AI
40S ribosomal protein rpS16 (S9p)
Chain AJ
40S ribosomal protein rpS20 (S10p)
Chain AY
40S ribosomal protein rpS28 (S28e)
Chain CB
Transfer RNA; tRNA
Chain CC
MRNA, RNA (5'-R(P*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3')

Coloring options:

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