J3_4V6I_041
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- UCUUAG*CGAGACC*GCAAUA
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V6I|1|CA|U|1283
4V6I|1|CA|C|1284
4V6I|1|CA|U|1285
4V6I|1|CA|U|1286
4V6I|1|CA|A|1287
4V6I|1|CA|G|1288
*
4V6I|1|CA|C|1327
4V6I|1|CA|G|1328
4V6I|1|CA|A|1329
4V6I|1|CA|G|1330
4V6I|1|CA|A|1331
4V6I|1|CA|C|1332
4V6I|1|CA|C|1333
*
4V6I|1|CA|G|1419
4V6I|1|CA|C|1420
4V6I|1|CA|A|1421
4V6I|1|CA|A|1422
4V6I|1|CA|U|1423
4V6I|1|CA|A|1424
Current chains
- Chain CA
- 18S rRNA
Nearby chains
- Chain AA
- 40S ribosomal protein rpS0 (S2p)
- Chain AB
- 40S ribosomal protein rpS3 (S3p)
- Chain AE
- 40S ribosomal protein rpS2 (S5p)
- Chain AI
- 40S ribosomal protein rpS16 (S9p)
- Chain AJ
- 40S ribosomal protein rpS20 (S10p)
- Chain AN
- 40S ribosomal protein rpS29 (S14p)
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