J3_4V6K_003

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

AC*GAUAAGC*GAUUU

Length

14 nucleotides

Bulged bases

4V6K|1|AB|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6K_003 not in the Motif Atlas

Homologous match to J3_5J7L_037

Geometric discrepancy: 0.1832

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

4V6K|1|AB|A|56
4V6K|1|AB|C|57
*
4V6K|1|AB|G|70
4V6K|1|AB|A|71
4V6K|1|AB|U|72
4V6K|1|AB|A|73
4V6K|1|AB|A|74
4V6K|1|AB|G|75
4V6K|1|AB|C|76
*
4V6K|1|AB|G|110
4V6K|1|AB|A|111
4V6K|1|AB|U|112
4V6K|1|AB|U|113
4V6K|1|AB|U|114

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AU

50S ribosomal protein L23

Chain AZ

50S ribosomal protein L29

Chain Ae

50S ribosomal protein L34