J3_4V6K_014

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6K_014 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.303

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V6K|1|BA|G|46
4V6K|1|BA|C|47
*
4V6K|1|BA|G|361
4V6K|1|BA|G|362
4V6K|1|BA|A|363
4V6K|1|BA|A|364
4V6K|1|BA|U|365
4V6K|1|BA|A|366
4V6K|1|BA|U|367
*
4V6K|1|BA|A|393
4V6K|1|BA|G|394
4V6K|1|BA|C|395

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BC

Elongation factor Tu 2

Chain BP

30S ribosomal protein S12

Chain BT

30S ribosomal protein S16