J3_4V6K_019

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6K_019 not in the Motif Atlas

Homologous match to J3_5J7L_005

Geometric discrepancy: 0.1886

The information below is about J3_5J7L_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4V6K|1|BA|U|943
4V6K|1|BA|G|944
4V6K|1|BA|G|945
4V6K|1|BA|A|946
*
4V6K|1|BA|U|1235
4V6K|1|BA|A|1236
4V6K|1|BA|C|1237
*
4V6K|1|BA|G|1337
4V6K|1|BA|G|1338
4V6K|1|BA|A|1339
4V6K|1|BA|A|1340

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BE

Transfer RNA; tRNA

Chain BM

30S ribosomal protein S9

Chain BQ

30S ribosomal protein S13