J3_4V6K_029

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

AGGAU*AUUUAAAG*CACU

Length

17 nucleotides

Bulged bases

4V6K|1|AB|A|1084, 4V6K|1|AB|A|1085

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6K|1|AB|A|1054
4V6K|1|AB|G|1055
4V6K|1|AB|G|1056
4V6K|1|AB|A|1057
4V6K|1|AB|U|1058
*
4V6K|1|AB|A|1080
4V6K|1|AB|U|1081
4V6K|1|AB|U|1082
4V6K|1|AB|U|1083
4V6K|1|AB|A|1084
4V6K|1|AB|A|1085
4V6K|1|AB|A|1086
4V6K|1|AB|G|1087
*
4V6K|1|AB|C|1102
4V6K|1|AB|A|1103
4V6K|1|AB|C|1104
4V6K|1|AB|U|1105

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AJ

50S ribosomal protein L11

Chain Ag

50S ribosomal protein L36