J3_4V6L_001

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6L_001 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.3355

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V6L|1|AA|G|46
4V6L|1|AA|C|47
*
4V6L|1|AA|G|361
4V6L|1|AA|G|362
4V6L|1|AA|A|363
4V6L|1|AA|A|364
4V6L|1|AA|U|365
4V6L|1|AA|A|366
4V6L|1|AA|U|367
*
4V6L|1|AA|A|393
4V6L|1|AA|G|394
4V6L|1|AA|C|395

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

Elongation factor Tu 2

Chain AP

30S ribosomal protein S12

Chain AT

30S ribosomal protein S16