J3_4V6L_017

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

CAGGAU*AUUUAAAG*CACUG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6L|1|BB|C|1053
4V6L|1|BB|A|1054
4V6L|1|BB|G|1055
4V6L|1|BB|G|1056
4V6L|1|BB|A|1057
4V6L|1|BB|U|1058
*
4V6L|1|BB|A|1080
4V6L|1|BB|U|1081
4V6L|1|BB|U|1082
4V6L|1|BB|U|1083
4V6L|1|BB|A|1084
4V6L|1|BB|A|1085
4V6L|1|BB|A|1086
4V6L|1|BB|G|1087
*
4V6L|1|BB|C|1102
4V6L|1|BB|A|1103
4V6L|1|BB|C|1104
4V6L|1|BB|U|1105
4V6L|1|BB|G|1106

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain BJ

50S ribosomal protein L11