3D structure

PDB id
4V6L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural insights into cognate vs. near-cognate discrimination during decoding.
Experimental method
ELECTRON MICROSCOPY
Resolution
13.2 Å

Loop

Sequence
UAGAAU*GGAAUACCGGUGG*CGG
Length
22 nucleotides
Bulged bases
4V6L|1|AA|U|723
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V6L|1|AA|U|672
4V6L|1|AA|A|673
4V6L|1|AA|G|674
4V6L|1|AA|A|675
4V6L|1|AA|A|676
4V6L|1|AA|U|677
*
4V6L|1|AA|G|713
4V6L|1|AA|G|714
4V6L|1|AA|A|715
4V6L|1|AA|A|716
4V6L|1|AA|U|717
4V6L|1|AA|A|718
4V6L|1|AA|C|719
4V6L|1|AA|C|720
4V6L|1|AA|G|721
4V6L|1|AA|G|722
4V6L|1|AA|U|723
4V6L|1|AA|G|724
4V6L|1|AA|G|725
*
4V6L|1|AA|C|732
4V6L|1|AA|G|733
4V6L|1|AA|G|734

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AJ
30S ribosomal protein S6
Chain AO
30S ribosomal protein S11
Chain AS
30S ribosomal protein S15
Chain AV
30S ribosomal protein S18
Chain AY
30S ribosomal protein S21
Chain BD
50S ribosomal protein L2

Coloring options:

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