3D structure

PDB id
4V6L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural insights into cognate vs. near-cognate discrimination during decoding.
Experimental method
ELECTRON MICROSCOPY
Resolution
13.2 Å

Loop

Sequence
UAU*AGACUGCC*GGAGGAAGGUG
Length
22 nucleotides
Bulged bases
4V6L|1|AA|U|1183
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V6L|1|AA|U|1116
4V6L|1|AA|A|1117
4V6L|1|AA|U|1118
*
4V6L|1|AA|A|1155
4V6L|1|AA|G|1156
4V6L|1|AA|A|1157
4V6L|1|AA|C|1158
4V6L|1|AA|U|1159
4V6L|1|AA|G|1160
4V6L|1|AA|C|1161
4V6L|1|AA|C|1162
*
4V6L|1|AA|G|1174
4V6L|1|AA|G|1175
4V6L|1|AA|A|1176
4V6L|1|AA|G|1177
4V6L|1|AA|G|1178
4V6L|1|AA|A|1179
4V6L|1|AA|A|1180
4V6L|1|AA|G|1181
4V6L|1|AA|G|1182
4V6L|1|AA|U|1183
4V6L|1|AA|G|1184

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AF
30S ribosomal protein S2
Chain AG
30S ribosomal protein S3
Chain AK
30S ribosomal protein S7
Chain AM
30S ribosomal protein S9
Chain AN
30S ribosomal protein S10
Chain AR
30S ribosomal protein S14

Coloring options:

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