J3_4V6M_006

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6M_006 not in the Motif Atlas

Homologous match to J3_5J7L_005

Geometric discrepancy: 0.1611

The information below is about J3_5J7L_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4V6M|1|AA|U|943
4V6M|1|AA|G|944
4V6M|1|AA|G|945
4V6M|1|AA|A|946
*
4V6M|1|AA|U|1235
4V6M|1|AA|A|1236
4V6M|1|AA|C|1237
*
4V6M|1|AA|G|1337
4V6M|1|AA|G|1338
4V6M|1|AA|A|1339
4V6M|1|AA|A|1340

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AI

30S ribosomal protein S9

Chain AM

30S ribosomal protein S13

Chain AV

Transfer RNA; tRNA