J3_4V6M_014
3D structure
- PDB id
- 4V6M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the ribosome-SecYE complex in the membrane environment
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7.1 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 4V6M|1|B7|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6M_014 not in the Motif Atlas
- Homologous match to J3_5J7L_049
- Geometric discrepancy: 0.2366
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V6M|1|B7|G|10
4V6M|1|B7|C|11
4V6M|1|B7|C|12
4V6M|1|B7|G|13
4V6M|1|B7|U|14
4V6M|1|B7|A|15
4V6M|1|B7|G|16
*
4V6M|1|B7|C|68
4V6M|1|B7|G|69
4V6M|1|B7|C|70
*
4V6M|1|B7|G|106
4V6M|1|B7|G|107
4V6M|1|B7|A|108
4V6M|1|B7|A|109
4V6M|1|B7|C|110
Current chains
- Chain B7
- 5S RIBOSOMAL RNA
Nearby chains
- Chain B8
- Large subunit ribosomal RNA; LSU rRNA
- Chain BO
- 50S ribosomal protein L18
- Chain BV
- 50S ribosomal protein L25
- Chain BW
- 50S ribosomal protein L27
Coloring options: