J3_4V6M_016

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

AC*GAUAAGC*GAUUU

Length

14 nucleotides

Bulged bases

4V6M|1|B8|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6M_016 not in the Motif Atlas

Homologous match to J3_5J7L_037

Geometric discrepancy: 0.1192

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

4V6M|1|B8|A|56
4V6M|1|B8|C|57
*
4V6M|1|B8|G|70
4V6M|1|B8|A|71
4V6M|1|B8|U|72
4V6M|1|B8|A|73
4V6M|1|B8|A|74
4V6M|1|B8|G|75
4V6M|1|B8|C|76
*
4V6M|1|B8|G|110
4V6M|1|B8|A|111
4V6M|1|B8|U|112
4V6M|1|B8|U|113
4V6M|1|B8|U|114

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BT

50S ribosomal protein L23

Chain BY

50S ribosomal protein L29