J3_4V6M_017

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

4V6M|1|B8|U|686, 4V6M|1|B8|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6M_017 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1362

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V6M|1|B8|U|683
4V6M|1|B8|G|684
4V6M|1|B8|A|685
4V6M|1|B8|U|686
4V6M|1|B8|C|687
4V6M|1|B8|U|688
4V6M|1|B8|A|689
*
4V6M|1|B8|U|773
4V6M|1|B8|G|774
4V6M|1|B8|G|775
*
4V6M|1|B8|C|791
4V6M|1|B8|A|792
4V6M|1|B8|A|793
4V6M|1|B8|A|794

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain B6

50S ribosomal protein L2