3D structure

PDB id
4V6M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the ribosome-SecYE complex in the membrane environment
Experimental method
ELECTRON MICROSCOPY
Resolution
7.1 Å

Loop

Sequence
GCA*UCAUAGUGAUCC*GCUCAAC
Length
22 nucleotides
Bulged bases
4V6M|1|B8|A|2388, 4V6M|1|B8|U|2390, 4V6M|1|B8|A|2426
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V6M_035 not in the Motif Atlas
Homologous match to J3_5J7L_070
Geometric discrepancy: 0.1161
The information below is about J3_5J7L_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

4V6M|1|B8|G|2282
4V6M|1|B8|C|2283
4V6M|1|B8|A|2284
*
4V6M|1|B8|U|2384
4V6M|1|B8|C|2385
4V6M|1|B8|A|2386
4V6M|1|B8|U|2387
4V6M|1|B8|A|2388
4V6M|1|B8|G|2389
4V6M|1|B8|U|2390
4V6M|1|B8|G|2391
4V6M|1|B8|A|2392
4V6M|1|B8|U|2393
4V6M|1|B8|C|2394
4V6M|1|B8|C|2395
*
4V6M|1|B8|G|2421
4V6M|1|B8|C|2422
4V6M|1|B8|U|2423
4V6M|1|B8|C|2424
4V6M|1|B8|A|2425
4V6M|1|B8|A|2426
4V6M|1|B8|C|2427

Current chains

Chain B8
23S RIBOSOMAL RNA

Nearby chains

Chain B1
50S ribosomal protein L33
Chain B3
50S ribosomal protein L35
Chain BL
50S ribosomal protein L15
Chain BW
50S ribosomal protein L27

Coloring options:


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