J3_4V6N_004

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

4V6N|1|AB|U|686, 4V6N|1|AB|A|792

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6N_004 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.2326

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V6N|1|AB|U|683
4V6N|1|AB|G|684
4V6N|1|AB|A|685
4V6N|1|AB|U|686
4V6N|1|AB|C|687
4V6N|1|AB|U|688
4V6N|1|AB|A|689
*
4V6N|1|AB|U|773
4V6N|1|AB|G|774
4V6N|1|AB|G|775
*
4V6N|1|AB|C|791
4V6N|1|AB|A|792
4V6N|1|AB|A|793
4V6N|1|AB|A|794

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain A5

50S ribosomal protein L34

Chain AD

50S ribosomal protein L2