J3_4V6N_005

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6N_005 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.2212

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4V6N|1|AB|C|698
4V6N|1|AB|A|699
4V6N|1|AB|G|700
*
4V6N|1|AB|C|732
4V6N|1|AB|G|733
4V6N|1|AB|A|734
4V6N|1|AB|A|735
4V6N|1|AB|C|736
*
4V6N|1|AB|G|760
4V6N|1|AB|A|761
4V6N|1|AB|U|762
4V6N|1|AB|G|763

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2