J3_4V6N_015

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6N_015 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.2762

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V6N|1|BA|G|46
4V6N|1|BA|C|47
*
4V6N|1|BA|G|361
4V6N|1|BA|G|362
4V6N|1|BA|A|363
4V6N|1|BA|A|364
4V6N|1|BA|U|365
4V6N|1|BA|A|366
4V6N|1|BA|U|367
*
4V6N|1|BA|A|393
4V6N|1|BA|G|394
4V6N|1|BA|C|395

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BO

30S ribosomal protein S12

Chain BS

30S ribosomal protein S16