J3_4V6N_032

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GAACGU*ACGUUGAU*AAUGAAC

Length

21 nucleotides

Bulged bases

4V6N|1|AB|U|2833, 4V6N|1|AB|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6N|1|AB|G|2812
4V6N|1|AB|A|2813
4V6N|1|AB|A|2814
4V6N|1|AB|C|2815
4V6N|1|AB|G|2816
4V6N|1|AB|U|2817
*
4V6N|1|AB|A|2829
4V6N|1|AB|C|2830
4V6N|1|AB|G|2831
4V6N|1|AB|U|2832
4V6N|1|AB|U|2833
4V6N|1|AB|G|2834
4V6N|1|AB|A|2835
4V6N|1|AB|U|2836
*
4V6N|1|AB|A|2882
4V6N|1|AB|A|2883
4V6N|1|AB|U|2884
4V6N|1|AB|G|2885
4V6N|1|AB|A|2886
4V6N|1|AB|A|2887
4V6N|1|AB|C|2888

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain A3

50S ribosomal protein L32

Chain AE

50S ribosomal protein L3

Chain AP

50S ribosomal protein L17

Chain AU

50S ribosomal protein L22