J3_4V6N_036

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6N_036 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.2339

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4V6N|1|BA|C|990
4V6N|1|BA|U|991
4V6N|1|BA|U|992
4V6N|1|BA|G|993
4V6N|1|BA|A|994
4V6N|1|BA|C|995
4V6N|1|BA|A|996
4V6N|1|BA|U|997
*
4V6N|1|BA|A|1044
4V6N|1|BA|C|1045
4V6N|1|BA|A|1046
4V6N|1|BA|G|1047
*
4V6N|1|BA|C|1210
4V6N|1|BA|U|1211
4V6N|1|BA|U|1212
4V6N|1|BA|A|1213
4V6N|1|BA|C|1214
4V6N|1|BA|G|1215

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BQ

30S ribosomal protein S14