J3_4V6O_002

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

CGG*CUUG*CG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6O_002 not in the Motif Atlas

Homologous match to J3_5J7L_002

Geometric discrepancy: 0.2822

The information below is about J3_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.5

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V6O|1|AA|C|586
4V6O|1|AA|G|587
4V6O|1|AA|G|588
*
4V6O|1|AA|C|651
4V6O|1|AA|U|652
4V6O|1|AA|U|653
4V6O|1|AA|G|654
*
4V6O|1|AA|C|754
4V6O|1|AA|G|755

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AK

30S ribosomal protein S8

Chain AO

30S ribosomal protein S12

Chain AR

30S ribosomal protein S15

Chain AT

30S ribosomal protein S17