J3_4V6O_015

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GAC*GAUAAGC*GAUUUC

Length

16 nucleotides

Bulged bases

4V6O|1|BB|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6O|1|BB|G|55
4V6O|1|BB|A|56
4V6O|1|BB|C|57
*
4V6O|1|BB|G|70
4V6O|1|BB|A|71
4V6O|1|BB|U|72
4V6O|1|BB|A|73
4V6O|1|BB|A|74
4V6O|1|BB|G|75
4V6O|1|BB|C|76
*
4V6O|1|BB|G|110
4V6O|1|BB|A|111
4V6O|1|BB|U|112
4V6O|1|BB|U|113
4V6O|1|BB|U|114
4V6O|1|BB|C|115

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L29

Chain B5

50S ribosomal protein L34

Chain BV

50S ribosomal protein L23